Contents of section "gnu-r" in suite "byzantium"

elpa-ess

Emacs mode for statistical programming and data analysis

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ess

Transition Package, ess to elpa-ess

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littler

GNU R scripting and command-line front-end -- transition package

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r-base

GNU R statistical computation and graphics system

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r-base-core

GNU R core of statistical computation and graphics system

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r-base-dev

GNU R installation of auxiliary GNU R packages

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r-bioc-affy

BioConductor methods for Affymetrix Oligonucleotide Arrays

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r-bioc-affyio

BioConductor tools for parsing Affymetrix data files

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r-bioc-all

Bioconductor data package used by several bioc tools

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r-bioc-altcdfenvs

BioConductor alternative CDF environments

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r-bioc-annotate

BioConductor annotation for microarrays

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r-bioc-annotationdbi

GNU R Annotation Database Interface for BioConductor

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r-bioc-annotationfilter

facilities for filtering Bioconductor annotation resources

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r-bioc-annotationhub

GNU R client to access AnnotationHub resources

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r-bioc-aroma.light

BioConductor methods normalization and visualization of microarray data

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r-bioc-beachmat

I/O for several formats storing matrix data

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r-bioc-biobase

base functions for Bioconductor

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r-bioc-bioccheck

Bioconductor-specific package checks

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r-bioc-biocfilecache

GNU R management of files across sessions

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r-bioc-biocgenerics

generic functions for Bioconductor

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r-bioc-biocparallel

BioConductor facilities for parallel evaluation

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r-bioc-biocsingular

Singular Value Decomposition for Bioconductor Packages

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r-bioc-biocversion

set the appropriate version of Bioconductor packages

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r-bioc-biocviews

Categorized views of R package repositories

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r-bioc-biomart

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

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r-bioc-biomformat

GNU R interface package for the BIOM file format

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r-bioc-biostrings

GNU R string objects representing biological sequences

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r-bioc-biovizbase

GNU R basic graphic utilities for visualization of genomic data

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r-bioc-bitseq

transcript expression inference and analysis for RNA-seq data

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r-bioc-bladderbatch

GNU R bladder gene expression data illustrating batch effects

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r-bioc-bsgenome

BioConductor infrastructure for Biostrings-based genome data packages

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r-bioc-chemminer

Cheminformatics Toolkit for R

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r-bioc-cner

CNE Detection and Visualization

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r-bioc-complexheatmap

make complex heatmaps using GNU R

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r-bioc-consensusclusterplus

GNU R determining cluster count and membership

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r-bioc-ctc

Cluster and Tree Conversion

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r-bioc-cummerbund

tool for analysis of Cufflinks RNA-Seq output

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r-bioc-dada2

sample inference from amplicon sequencing data

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r-bioc-degreport

BioConductor report of DEG analysis

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r-bioc-delayedarray

BioConductor delayed operations on array-like objects

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r-bioc-demixt

Cell type-specific deconvolution of heterogeneous tumor samples

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r-bioc-deseq

GNU R differential gene expression analysis

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r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis

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r-bioc-dexseq

GNU R inference of differential exon usage in RNA-Seq

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r-bioc-dirichletmultinomial

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

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r-bioc-dnacopy

R package: DNA copy number data analysis

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r-bioc-ebseq

R package for RNA-Seq Differential Expression Analysis

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r-bioc-edaseq

GNU R exploratory data analysis and normalization for RNA-Seq

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r-bioc-edger

Empirical analysis of digital gene expression data in R

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r-bioc-ensembldb

GNU R utilities to create and use an Ensembl based annotation database

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