Contents of section "gnu-r" in suite "purple"

elpa-ess
main

Emacs mode for statistical programming and data analysis

ess
main

Transition Package, ess to elpa-ess

littler
main

GNU R scripting and command-line front-end -- transition package

r-base
main

GNU R statistical computation and graphics system

r-base-core
main

GNU R core of statistical computation and graphics system

r-base-dev
main

GNU R installation of auxiliary GNU R packages

r-bioc-affy
main

BioConductor methods for Affymetrix Oligonucleotide Arrays

r-bioc-affyio
main

BioConductor tools for parsing Affymetrix data files

r-bioc-altcdfenvs
main

BioConductor alternative CDF environments

r-bioc-annotate
main

BioConductor annotation for microarrays

r-bioc-annotationdbi
main

GNU R Annotation Database Interface for BioConductor

r-bioc-annotationfilter
main

facilities for filtering Bioconductor annotation resources

r-bioc-annotationhub
main

GNU R client to access AnnotationHub resources

r-bioc-aroma.light
main

BioConductor methods normalization and visualization of microarray data

r-bioc-biobase
main

base functions for Bioconductor

r-bioc-biocgenerics
main

generic functions for Bioconductor

r-bioc-biocinstaller
main

Install/Update Bioconductor and CRAN Packages

r-bioc-biocparallel
main

BioConductor facilities for parallel evaluation

r-bioc-biomart
main

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

r-bioc-biomformat
main

GNU R interface package for the BIOM file format

r-bioc-biostrings
main

GNU R string objects representing biological sequences

r-bioc-biovizbase
main

GNU R basic graphic utilities for visualization of genomic data

r-bioc-bitseq
main

transcript expression inference and analysis for RNA-seq data

r-bioc-bsgenome
main

BioConductor infrastructure for Biostrings-based genome data packages

r-bioc-cner
main

CNE Detection and Visualization

r-bioc-cummerbund
main

tool for analysis of Cufflinks RNA-Seq output

r-bioc-delayedarray
main

BioConductor delayed operations on array-like objects

r-bioc-deseq2
main

R package for RNA-Seq Differential Expression Analysis

r-bioc-dirichletmultinomial
main

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

r-bioc-dnacopy
main

R package: DNA copy number data analysis

r-bioc-ebseq
main

R package for RNA-Seq Differential Expression Analysis

r-bioc-ensembldb
main

GNU R utilities to create and use an Ensembl based annotation database

r-bioc-genefilter
main

methods for filtering genes from microarray experiments

r-bioc-geneplotter
main

R package of functions for plotting genomic data

r-bioc-genomeinfodb
main

BioConductor utilities for manipulating chromosome identifiers

r-bioc-genomeinfodbdata
main

BioConductor species and taxonomy ID look up tables

r-bioc-genomicalignments
main

BioConductor representation and manipulation of short genomic alignments

r-bioc-genomicfeatures
main

GNU R tools for making and manipulating transcript centric annotations

r-bioc-genomicranges
main

BioConductor representation and manipulation of genomic intervals

r-bioc-go.db
main

annotation maps describing the entire Gene Ontology

r-bioc-graph
main

handle graph data structures for BioConductor

r-bioc-gviz
main

Plotting data and annotation information along genomic coordinates

r-bioc-hypergraph
main

BioConductor hypergraph data structures

r-bioc-impute
main

Imputation for microarray data

r-bioc-interactivedisplaybase
main

base package for enabling powerful shiny web displays of Bioconductor objects

r-bioc-iranges
main

GNU R low-level containers for storing sets of integer ranges

r-bioc-keggrest
main

GNU R client-side REST access to KEGG

r-bioc-limma
main

linear models for microarray data

r-bioc-makecdfenv
main

BioConductor CDF Environment Maker

r-bioc-mergeomics
main

Integrative network analysis of omics data