- libc6 (>= 2.27)
- libgcc1 (>= 1:4.5)
- libgomp1 (>= 4.2.1)
- libstdc++6 (>= 5.2)
- zlib1g (>= 1:1.1.4)
- python
- daligner
- dazzdb
- dascrubber
- python-numpy
- python-ujson
- python-configparser
- python-colormap
- python-pbcore
- python-networkx
- python-matplotlib
HINGE is a genome assembler that seeks to achieve optimal repeat resolution
by distinguishing repeats that can be resolved given the data from those that
cannot. This is accomplished by adding “hinges” to reads for constructing an
overlap graph where only unresolvable repeats are merged. As a result, HINGE
combines the error resilience of overlap-based assemblers with
repeat-resolution capabilities of de Bruijn graph assemblers.
Installed Size: 2.7 MB
Architectures: amd64 arm64