mlv-smile - 1.47-6 main

Smile determines sequence motifs on the basis of a set of DNA, RNA or
protein sequences.
* No hard limit on the number of combinations of motifs to describe
subsets of sequences.
* The sequence alphabet may be specified.
* The use of wildcards is supported.
* Better determination of significance of motifs by simulation.
* Introduction of a set of sequences with negative controls
that should not match automatically determined motifs.