- libc6 (>= 2.27)
- libgcc1 (>= 1:3.0)
- libgomp1 (>= 4.9)
- libmuscle1 (>= 3.7+4565)
- libstdc++6 (>= 5.2)
- python:any
- python-numpy
- fasttree
- mummer
- phipack
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction.
Installed Size: 894.0 kB
Architectures: amd64 arm64