- python:any (<< 2.8)
- python:any (>= 2.7~)
- python-pbsuite-utils (= 15.8.24+dfsg-3)
- python-pbbanana (= 15.8.24+dfsg-3)
- python-pysam (>= 0.8.0)
- python-networkx
- python-h5py
- python-numpy
- python-intervaltree-bio
- blasr (>= 5.3)
- samtools
PBHoney is an implementation of two variant-identification
approaches designed to exploit the high mappability of long reads
(i.e., greater than 10,000 bp). PBHoney considers both intra-read
discordance and soft-clipped tails of long reads to identify
structural variants.
.
PBHoney is part of the PBSuite.
Installed Size: 2.4 MB
Architectures: all