- libboost-system1.67.0
- libboost-thread1.67.0
- libc6 (>= 2.17)
- libgcc1 (>= 1:3.0)
- libstdc++6 (>= 5.2)
- zlib1g (>= 1:1.2.3.3)
- python
- bowtie2 | bowtie
- samtools (>= 1.5)
TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra
high-throughput short read aligner Bowtie, and then analyzes the
mapping results to identify splice junctions between exons.
TopHat is a collaborative effort between the University of Maryland
Center for Bioinformatics and Computational Biology and the
University of California, Berkeley Departments of Mathematics and
Molecular and Cell Biology.
Installed Size: 3.7 MB
Architectures: amd64 arm64