- python3:any
- pandoc-citeproc
- snakemake
- fastqc
- samtools
- python3-deeptools
- salmon
- rna-star
- trim-galore
- multiqc
- python3-htseq
- r-bioc-deseq2
- r-bioc-tximport
- r-cran-data.table
- r-cran-rlang
- r-cran-rmarkdown
- r-cran-ggplot2
- r-cran-ggrepel
- r-cran-dt (>= 0.15+dfsg-2)
- r-cran-pheatmap
- r-cran-corrplot
- r-cran-reshape2
- r-cran-plotly
- r-cran-scales
- r-cran-crosstalk
- r-cran-gprofiler
- r-bioc-summarizedexperiment
- r-bioc-rtracklayer
- r-cran-rjson
- libjs-jquery-datatables
- libjs-jquery-tablesorter