- libc6 (>= 2.17)
- libdisorder0 (>= 0.0.2)
- libfastahack0 (>= 0.0+git20160702.bbc645f)
- libgcc-s1 (>= 3.0)
- libstdc++6 (>= 5.2)
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
Installed Size: 86.0 kB
Architectures: amd64 arm64