kleborate-examples - 2.3.1-2 main

Kleborate is a tool to screen Klebsiella genome assemblies for:
.
* MLST sequence type
* species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
* ICEKp associated virulence loci: yersiniabactin (ybt),
colibactin (clb)
* virulence plasmid associated loci: salmochelin (iro), aerobactin
(iuc), hypermucoidy (rmpA, rmpA2)
* antimicrobial resistance genes, including quinolone resistance SNPs
and colistin resistance truncations
* K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
and Kaptive
.
This package provides example data end tests that are used in autopkgtest.