python3-nanoget-examples - 1.16.1-2 main

The Python3 module nanoget provides functions to extract useful metrics
from Oxford Nanopore sequencing reads and alignments.
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Data can be presented in the following formats, using the following functions:
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* sorted bam file process_bam(bamfile, threads)
* standard fastq file process_fastq_plain(fastqfile, 'threads')
* fastq file with metadata from MinKNOW or Albacore
process_fastq_rich(fastqfile)
* sequencing_summary file generated by Albacore
process_summary(sequencing_summary.txt, 'readtype')
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Fastq files can be compressed using gzip, bzip2 or bgzip. The data is
returned as a pandas DataFrame with standardized headernames for
convenient extraction. The functions perform logging while being called
and extracting data.
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This package just contains an example script and the data to run the example.