- python3 (<< 3.12)
- python3 (>= 3.11~)
- python3-pybind11
- libc6 (>= 2.32)
- libgcc-s1 (>= 3.0)
- libspoa7.0.0 (>= 4.0.5)
- libstdc++6 (>= 11)
Spoa (SIMD POA) is a c++ implementation of the partial order alignment
(POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which
is used to generate consensus sequences (as described in
10.1093/bioinformatics/btg109). It supports three alignment modes: local
(Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment
(overlap).
.
This package presents Python bindings for the spoa library
Installed Size: 146.4 kB
Architectures: arm64 amd64