amap-align - 2.2+git20080214.600fc29+dfsg-2 main

AMAP is a command line tool to perform multiple alignment of peptidic
sequences. It utilizes posterior decoding, and a sequence-annealing
alignment, instead of the traditional progressive alignment method. It is
the only alignment program that allows one to control the sensitivity /
specificity tradeoff. It is based on the ProbCons source code, but
uses alignment metric accuracy and eliminates the consistency
transformation.
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The Java visualisation tool of AMAP 2.2 is not yet packaged in Debian.