- libc6 (>= 2.38)
- libgcc-s1 (>= 3.0)
- libstdc++6 (>= 14)
- zlib1g (>= 1:1.1.4)
Libbifrost is the shared library for the command-line tool bifrost for
sequencing that features a broad range of functions, such as indexing,
editing, and querying the graph, and includes a graph coloring method
that maps each k-mer of the graph to the genomes it occurs in.
.
* Build, index, color and query the compacted de Bruijn graph
* No need to build the uncompacted de Bruijn graph
* Reads or assembled genomes as input
* Output graph in GFA (can be visualized with Bandage), FASTA or binary
* Graph cleaning: short tip clipping, etc.
* Multi-threaded
* No parameters to estimate with other tools
* Exact or approximate k-mer search of queries
Installed Size: 1.4 MB
Architectures: arm64 amd64