- libbz2-1.0
- libc6 (>= 2.34)
- libcurl3t64-gnutls (>= 7.18.0)
- libdeflate0 (>= 1.0)
- libhtscodecs2 (>= 1.3.0)
- liblzma5 (>= 5.1.1alpha+20120614)
- libssl3t64 (>= 3.0.0)
- zlib1g (>= 1:1.1.4)
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
Installed Size: 1.3 MB
Architectures: arm64 amd64