Raptor is a system for approximately searching many queries such as
next-generation sequencing reads or transcripts in large collections of
nucleotide sequences. Raptor uses winnowing minimizers to define a set of
representative k-mers, an extension of the interleaved Bloom filters (IBFs) as
a set membership data structure and probabilistic thresholding for minimizers.
This approach allows compression and partitioning of the IBF to enable the
effective use of secondary memory.
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This package contains Raptor's docs (HTML & PDF).
Installed Size: 7.3 MB
Architectures: all