skewer - 0.2.2-6+b2 main

skewer implements the bit-masked k-difference matching algorithm
dedicated to the task of adapter trimming and it is specially designed
for processing next-generation sequencing (NGS) paired-end sequences.
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Features
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* Detection and removal of adapter sequences
* Insertion and deletion allowed in pattern matching
* Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
* Demultiplexing of barcoded sequencing runs
* Multi-threading support
* Trimming based on phred quality scores
* IUPAC characters for barcodes and adapters
* Compressed input and output support