abpoa - 1.5.3-1+b2 main

abPOA is an extended version of Partial Order Alignment (POA) that performs
adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
can perform multiple sequence alignment (MSA) on a set of input sequences and
generate a consensus sequence by applying the heaviest bundling algorithm to
the final alignment graph.
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abPOA can generate high-quality consensus sequences from error-prone long
reads and offer significant speed improvement over existing tools.
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abPOA supports three alignment modes (global, local, extension) and flexible
scoring schemes that allow linear, affine and convex gap penalties. It right
now supports SSE2/SSE4.1/AVX2 vectorization.
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For more information please refer to the paper[1] published in Bioinformatics.
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[1]: https://dx.doi.org/10.1093/bioinformatics/btaa963

Priority: optional
Section: science
Suites: crimson dawn landing 
Maintainer: Debian Med Packaging Team <debian-med-packaging [꩜] lists.alioth.debian.org>
 
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Dependencies

Installed Size: 410.6 kB
Architectures: arm64  amd64 

 

Versions

1.5.3-1+b2 arm64 1.5.3-1+b2 amd64 1.5.3-1+b1 arm64 1.5.3-1+b1 amd64 1.5.3-1 arm64 1.5.3-1 amd64