beagle-doc - 241029-1 main

Beagle performs genotype calling, genotype phasing, imputation of ungenotyped
markers, and identity-by-descent segment detection. Genotypic imputation works
on phased haplotypes using a Li and Stephens haplotype frequency model.
Beagle also implements the Refined IBD algorithm for detecting
homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.
.
This package includes the Beagle API javadocs, and examples.