bppsuite - 2.4.1-7+b1 main

The Bio++ Program Suite is a package of programs using the Bio++
libraries and dedicated to Phylogenetics and Molecular Evolution. All
programs are independent, but can be combined to perform rather complex
analyses. These programs use the interface helper tools of the
libraries, and hence share the same syntax. They also have several
options in common, which may also be shared by third-party software.
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The following programs are included:
- BppML for maximum likelihood analysis,
- BppSeqGen for sequences simulation,
- BppAncestor for ancestral states reconstruction,
- BppDist for distance methods,
- BppPars for parsimony analysis,
- BppSeqMan for file conversion and sequence manipulation,
- BppConsense for building consensus tree and computing
bootstrap values,
- BppReRoot for tree rerooting.
- BppTreeDraw for tree drawing.
- BppAlnScore for comparing alignments and computing alignment scores.
- BppMixedLikelihoods for computing site per site likelihoods of
components of mixture models.
- BppPopGen for population genetics analyses.