gsort - 0.1.4-3+b22 main

gsort is a tool to sort genomic files according to a genomefile.
For example, to sort VCF to have order:
X, Y, 2, 1, 3, ... and the header needs to be kept at the top.
.
As a more likely example, if a file nneds to be sorted to match GATK
order (1 ... X, Y, MT) which is not possible with any other sorting
tool. With gsort one can simply place MT as the last chrom in the
".genome" file.
.
It will also be useful for getting files ready for use in bedtools.

Priority: optional
Section: science
Suites: byzantium crimson dawn landing 
Maintainer: Debian Med Packaging Team <debian-med-packaging [꩜] lists.alioth.debian.org>
 
Homepage Source Package
 

Dependencies

Installed Size: 6.4 MB
Architectures: arm64  amd64 

 

Versions

0.1.4-3+b22 arm64 0.1.4-3+b22 amd64 0.1.4-3+b21 arm64 0.1.4-3+b21 amd64 0.1.4-3+b20 arm64 0.1.4-3+b20 amd64 0.1.4-3+b19 arm64 0.1.4-3+b19 amd64 0.1.4-3+b18 arm64 0.1.4-3+b18 amd64 0.1.4-3+b17 arm64 0.1.4-3+b17 amd64 0.1.4-3+b16 amd64 0.1.4-3+b16 arm64 0.1.4-3+b15 arm64 0.1.4-3+b15 amd64 0.1.4-3+b12 arm64 0.1.4-3+b12 amd64 0.1.4-3+b6 arm64 0.1.4-3+b6 amd64 0.1.4-3+b2 arm64 0.1.4-3+b2 amd64