liballelecount-perl - 4.3.0-3 main

Support code for NGS copy number algorithms. Takes a file of locations
and a [cr|b]am file and generates a count of coverage of each allele
[ACGT] at that location (given any filter settings).
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The alleleCount package primarily exists to prevent code duplication
between some other projects, specifically AscatNGS and Battenberg.
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This package provided the Perl interface to alleleCounter providing
Sanger::CGP::AlleleCount::Genotype.