phybin - 0.3-6 main

PhyBin is a simple command line tool that classifies a set of Newick
tree files by their topology. The purpose of it is to take a large set
of tree files and browse through the most common tree topologies.
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It can do simple binning of identical trees or more complex clustering
based on an all-to-all Robinson-Foulds distance matrix.
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phybin produces output files that characterize the size and contents of
each bin or cluster (including generating GraphViz-based visual
representations of the tree topologies).