- r-api-4.0
- r-api-bioc-3.20
- r-bioc-biocgenerics
- r-bioc-s4vectors
- r-bioc-iranges
- r-bioc-biostrings (>= 2.71.5)
- r-bioc-xvector
- libc6 (>= 2.17)
The two main functions in the package are pairwiseAlignment() and
stringDist(). The former solves (Needleman-Wunsch) global alignment,
(Smith-Waterman) local alignment, and (ends-free) overlap alignment
problems. The latter computes the Levenshtein edit distance or pairwise
alignment score matrix for a set of strings.
Installed Size: 1.2 MB
Architectures: arm64 amd64