Contents of section "Science" in suite "amber"

hyphy-common

Hypothesis testing using Phylogenies (common files)

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hyphy-mpi

Hypothesis testing using Phylogenies (MPI version)

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hyphy-pt

Hypothesis testing using Phylogenies (pthreads version)

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idba

iterative De Bruijn Graph short read assemblers

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ifrit

powerful tool for visualizing 3-dimensional data sets

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igor

infers V(D)J recombination processes from sequencing data

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imagej

Image processing program with a focus on microscopy images

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imagevis3d

desktop volume rendering application for large data

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imview

Image viewing and analysis application

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indelible

powerful and flexible simulator of biological evolution

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indigo-utils

Organic Chemistry Toolkit Utilities

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infernal

inference of RNA secondary structural alignments

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inhomog

kinematical backreaction and average scale factor evolution

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ipig

integrating PSMs into genome browser visualisations

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iqtree

efficient phylogenetic software by maximum likelihood

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iraf

Image Reduction and Analysis Facility

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iraf-dev

Image Reduction and Analysis Facility (development files)

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iraf-fitsutil

FITS utilities for IRAF

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iraf-mscred

CCD mosaic reduction package for IRAF

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iraf-noao

IRAF NOAO data reduction package

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iraf-noao-dev

IRAF NOAO data reduction package (development files)

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iraf-rvsao

IRAF package to obtain radial velocities from spectra

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iraf-sptable

IRAF package for Tabular Spectra

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iraf-wcstools

Handle the WCS of a FITS image (IRAF package)

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irstlm

IRST Language Modeling Toolkit

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ismrmrd-schema

schema for ISMRMRD

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ismrmrd-tools

command-line tools for ISMRMRD

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itksnap

semi-automatic segmentation of structures in 3D images

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iva

iterative virus sequence assembler

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jaligner

Smith-Waterman algorithm with Gotoh's improvement

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jblas

fast linear algebra library for Java

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jellyfish

count k-mers in DNA sequences

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jellyfish1

count k-mers in DNA sequences

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jellyfish-examples

count k-mers in DNA sequences (examples for testing)

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jemboss

graphical user interface to EMBOSS

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jmodeltest

HPC selection of models of nucleotide substitution

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jmol

Molecular Viewer

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jsamp

Java Simple Application Messaging Protocol tool for VO

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jube

JUBE Benchmarking Environment

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julia

high-performance programming language for technical computing

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julia-common

high-performance programming language for technical computing (common files)

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jupyter-notebook

Jupyter interactive notebook

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kalign

Global and progressive multiple sequence alignment

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kalzium

periodic table and chemistry tools

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kalzium-data

data files for Kalzium

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khmer

in-memory DNA sequence kmer counting, filtering & graph traversal

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khmer-common

common files for the khmer project tools

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kineticstools

detection of DNA modifications

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kineticstools-data

detection of DNA modifications -- data files

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king-probe

Evaluate and visualize protein interatomic packing

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