Contents of section "Science" in suite "amber"

transtermhp

find rho-independent transcription terminators in bacterial genomes

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travis

trajectory analyzer and visualizer

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tree-ppuzzle

Parallelized reconstruction of phylogenetic trees by maximum likelihood

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tree-puzzle

Reconstruction of phylogenetic trees by maximum likelihood

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treeview

Java re-implementation of Michael Eisen's TreeView

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treeviewx

Displays and prints phylogenetic trees

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trimmomatic

flexible read trimming tool for Illumina NGS data

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trinityrnaseq

RNA-Seq De novo Assembly

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trinityrnaseq-examples

RNA-Seq De novo Assembly common example and testing files

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tunnelx

Cave Survey drawing software

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tvc

genetic variant caller for Ion Torrent sequencing platforms

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twms

tiny web map service

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ubertooth

2.4 GHz wireless development platform for Bluetooth experimentation

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ubertooth-firmware

Firmware for Ubertooth

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ubertooth-firmware-source

Source code for the Ubertooth firmware

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uc-echo

error correction algorithm designed for short-reads from NGS

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ucto

Unicode Tokenizer

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uctodata

Data files for Ucto

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uhd-host

universal hardware driver for Ettus Research products - host apps

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unanimity

generate and process accurate consensus nucleotide sequences

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unicycler

hybrid assembly pipeline for bacterial genomes

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unicycler-data

hybrid assembly pipeline for bacterial genomes (data package)

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units-filter

Parser for expressions concerning physical values

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varna

Visualization Applet for RNA

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vcftools

Collection of tools to work with VCF files

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velvet

Nucleic acid sequence assembler for very short reads

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velvet-example

Example data for the Velvet sequence assembler

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velvet-long

Nucleic acid sequence assembler for very short reads, long version

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velvetoptimiser

automatically optimise Velvet do novo assembly parameters

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velvet-tests

Test data for the Velvet sequence assembler

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viewmol

graphical front end for computational chemistry programs

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visp-images-data

visual servoing library - dataset reference files

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vistrails

Science visualisation workflow toolkit

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voro++

library for the computation of the Voronoi diagram

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voro++-examples

library for the computation of the Voronoi diagram (examples)

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voronota

Voronoi diagram-based tool to find atom contacts

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votca-csg

VOTCA's coarse-graining engine

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votca-csg-scripts

VOTCA's coarse-graining scripts

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votca-csg-tutorials

VOTCA's coarse-graining tutorials

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voxbo

processing, statistical analysis, and display of brain imaging data

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vsearch

tool for processing metagenomic sequences

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wcslib-tools

Command line tools utilizing wcslib

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wcstools

Handle the WCS of a FITS image

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weightwatcher

Combine maps and polygon data for astronomical image processing

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weka

Machine learning algorithms for data mining tasks

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wigeon

reimplementation of the Pintail 16S DNA anomaly detection utility

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wise

comparison of biopolymers, like DNA and protein sequences

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wsclean

Fast generic widefield interferometric imager

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wxastrocapture

Windows linuX Astronomy Capture

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xbs

3-d models and movies of molecules

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