Versatile omics shotgun and amplicon sequencing read simulator
Molecular dynamics simulator, with building and analysis tools
GROMACS molecular dynamics sim, data and documentation
sort genomic data
phylogenetic analysis of genome sequences
visual simulator of 1 and 2-dimensional vibrations
Genome-Wide Association Meta Analysis
Scanning Probe Microscopy visualization and analysis tool
architecture-independent files for Gwyddion SPM analysis tool
General relativistic geodesic integration and ray-tracing
General relativistic ray-tracing command-line interface
HDF5 files visualization tools
extraction of complex frequencies and amplitudes from time series
archiving and postprocessing for reference-compressed genomic multi-alignments
external filters for HDF5: LZ4, BZip2, Bitshuffle
blocking, shuffling and lossless compression library
Compression plugin for the HDF5 library using ZFP compression
HDF5 - Helper tools
HDF5 - Runtime tools
viewer for HDF5 and related formats
machine learning tools for classification algorithms
DICOM converter with support for structure heuristics
Helsinki Finite-State Transducer Technology
Spell checker library and tool based on HFST
sensitive protein sequence searching based on HMM-HMM alignment
sensitive protein sequence searching based on HMM-HMM alignment (data)
realtime alignment of Illumina reads
long read genome assembler based on hinging
graph-based alignment of short nucleotide reads to many genomes
profile hidden Markov models for protein sequence analysis
prints the date in Latin
HPC Challenge benchmark
tools biological sequences: bam-filter, count-reads, vcf-check
Hypothesis testing using Phylogenies (common files)
Hypothesis testing using Phylogenies (MPI version)
Hypothesis testing using Phylogenies (pthreads version)
iterative De Bruijn Graph short read assemblers
iterative De Bruijn Graph short read assemblers (extra tools)
Benchmark generator for the IDseq Portal
Interactive XAFS analysis program
Immunoglobulin and T cell receptor variable domain sequence analysis
Collection of useful code used by robotics apps - CLI tools
Ignition Robotics transport Library - CLI tools
infers V(D)J recombination processes from sequencing data
Integrative Genomics Viewer
Implicit Interval Tree with Interpolation Index
cartoonish representations of large biological molecules
Image processing program with a focus on microscopy images
Image viewing and analysis application