simulator for geometrical optics

Virtual lens/mirror design workshop

Integrating genetic variations in miRNA alignment

Lightweight, RESTful DICOM server for medical imaging

Plugin to extend Orthanc with support of WADO and DICOMweb

DICOM transcoder/decoder for Orthanc using GDCM (notably for JPEG2k)

ImageJ plugin to import images from Orthanc

Plugins to use MySQL or MariaDB as a database back-end to Orthanc

Neuroimaging plugin for Orthanc

Plugins to use PostgreSQL as a database back-end to Orthanc

Develop plugins for Orthanc using the Python programming language

Web viewer of medical images for Orthanc

Whole-slide imaging support for Orthanc (digital pathology)

Open Source CPAP Analysis Reporter (OSCAR)

optical structure recognition

ORFEO Toolbox command line applications

ORFEO Toolbox graphical user interface applications

ORFEO Toolbox library - OTBTestDriver

Open Trace Format support library - tools

Open Trace Format support library - development files

Initial configurations for Molecular Dynamics Simulations

generic visualization tool (Gantt chart and more)

converts proteins to genomic DNA alignment

pipelines and tools for the processing of ancient and modern HTS data

Phylogenetic Analysis by Maximum Likelihood (PAML)

PAN Blend config package

PAN Blends tasks for tasksel

Parametric clustering of genomic and transcriptomic features

parallel command processing using OpenMP

parallel fastq-dump wrapper

Parallel Visualization Application

Parsimonious Insertion of unclassified sequences into phylogenetic trees

Test data for parsinsert

rapid core genome multi-alignment

rapid alignment of short sequences to large databases

processing Pacific Biosciences binary alignment/map files

sequence consensus using directed acyclic graphs

genomic structural variation discovery

genome assembly upgrading tool

simulator for PacBio sequencing reads

Preparation of protein structures for electrostatics calculations

tools for manipulating and editing PDB files

Graphical design of primers for PCR

efficient mapping of short reads with periodic spaced seeds

GUI for uncertainty treatment and variabilities management

build and search protein and DNA generalized profiles

phylogenetic analysis with space/time models

PHI test and other tests of recombination

binning/clustering newick trees by topology

package of programs for inferring phylogenies