Data Representation Standard library for antibody and TCR sequences

edit and Hamming distances for biological sequences

Atomistic Machine-learning Package (python 3)

library to enable flexible, scalable operations on genomic interval dataframes

Simulate and fit X-ray and neutron GISAS -- Python3

prepare CIF files for electronic structure calculations

VCF parser based on htslib (Python 3)

DICOM to NIfTI conversion - python3 package

platform for exploring biological deep-sequencing data

handlig GTF-like sequence-associated interal-annotation

Diffraction Integration for Advanced Light Sources - Python3

adapter prediction for small RNA sequencing - library

visualizing high-throughput microbial community data

Escript/Finley finite elements Python3 system (with OpenMP)

Escript/Finley finite elements Python3 system (OpenMP + MPI)

Fast Forward Computer Vision (and other ML workloads)

Python libraries for small angle scattering tools

wraps command line tools to assess variants in gene sequences

flexible and extensible software library for handling sequence graphs

Work with GFF and GTF files in a flexible database framework

parser for gene transfer format (aka GFF2)

is a data integration algorithm

binary encoding of biological structures (Python 3)

Multi-OpenRobot Simulation Engine

Python GPU framework for alchemical free energy calculations (Python 3)

statistics on long biological sequences

Navigation tool for ARPES data (Python 3)

Perlin noise for image generation

Open Neural Network Exchange (ONNX) (Python)

parameter and topology file editor and molecular mechanical simulator

tools for manipulating and editing PDB files (Python 3 package)

generate atomic oligopeptide 3D structure from sequence

Fast, flexible and easy to use probabilistic modelling

Protein Binding Affinity Prediction (Python 3)

Python package for protein dynamics analysis

Python package for protein dynamics analysis - test data

access to 2bit files

Biological Expression Language

Python 3 module for quick access to bigBed and bigWig files

Image Tool for multidimensional analysis (Python 3)

Python implementation of the multistate Bennett acceptance ratio (MBAR)

PyNLPl is a library for Natural Language Processing (Python 3 version)

Object-Oriented Crystallographic Library bindings (Python 3)

modeling of X-ray diffraction (XRD) patterns of disordered lamellar structures

scikit-learn compatible neural network library that wraps PyTorch

numerical representation of differences between strings

Data manipulation and transformation for audio signal processing

Data loaders and abstractions for text and NLP

Datasets, Transforms and Models specific to Computer Vision

sequence logo generator