rapmap - rapid sensitive and accurate DNA read mapping (some headers)

example data for rapmap - rapid sensitive and accurate DNA read mapping

visualization of biological macromolecules

tools for generating images of proteins or other molecules

detector of conserved amino-acid sites

RAW photo to FITS converter

Randomized Axelerated Maximum Likelihood of phylogenetic trees

de novo genome assemblies of next-gen sequencing data

Scripts and XSL sheets for post-processing for ray

Immunoglobulin Clonal Lineage and Diversity Analysis

Species Distribution Modelling Tools

Immunoglobulin Somatic Hypermutation Analysis

Infers new Immunoglobulin alleles from Rep-Seq Data

convert RDF data to either R2RML script or PlantUML diagram

Conversion between sequence formats

universal tool for genome assembly evaluation

genetic distance plotting for recombination events analysis

dictionary for macromolecular refinement and model building

toolkit for 3D reconstructions in cryo-electron microscopy

toolkit for 3D reconstructions in cryo-electron microscopy (gui apps)

finds repeat families from biological sequences

protein secondary structure and accessibility predictor

identify acquired antimicrobial resistance genes

ResFinder database is a curated database of acquired resistance genes

identify acquired antimicrobial resistance genes (example data)

Fast and effective prediction of microRNA/target duplexes

ultrafast universal RNA-seq aligner

high speed stand alone pan genome pipeline

NASA Chemical Equilibrium, wrapped in Python

system for analyzing bacterial RNA-seq data

versatile and scalable algorithm for rogue taxon identification

routine updater for a Debian source package

RNA-Seq by Expectation-Maximization

Classification of sequence reads of 16S ribosomal RNA gene

parse, edit and write GFA format graphs in Ruby

GUI tool to run circos

Convert SAC waveform data to MiniSEED

System for Automated Geoscientific Analyses

SAGA GIS architecture independent files

Significance Analysis of INTeractome

rapid Kmer based Salmonella identifier from sequence data

wicked-fast transcript quantification from RNA-seq data

tools for working with SAM/BAM data

marks duplicates, extracts discordant/split reads

filter SAM file for soft and hard clipped alignments

processing sequence alignments in SAM, BAM and CRAM formats

test files for the samtools package

Image display tool for astronomy

Tcl XML-RPC implementation from SAO

Small Angle Scattering Analysis suite