Contents of section "Science" in suite "landing"

astrometry-data-tycho2-10-19-littleendian

Astrometry.net Tycho-2 little endian index files (60'-2000')

main
astrometry.net

Astrometry plate solver

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astronomical-almanac

astronomical almanac - calculate planet and star positions

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astropy-utils

Command line tools from astropy

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astro-tasks

Debian Astronomy Pure Blend (tasksel tasks)

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atac

genome assembly-to-assembly comparison

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ataqv

ATAC-seq QC and visualization

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atomes

atomic-scale 3D modeling toolbox

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atomes-data

atomic-scale 3D modeling toolbox (data)

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atropos

NGS read trimming tool that is specific, sensitive, and speedy

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augur

pipeline components for real-time virus analysis

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augustus

gene prediction in eukaryotic genomes

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augustus-data

data files for AUGUSTUS

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autodock

analysis of ligand binding to protein structure

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autodock-getdata

instructions for getData to collect compounds

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autodock-test

test files for AutoDock

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autodock-vina

docking of small molecules to proteins

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autogrid

pre-calculate binding of ligands to their receptor

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autogrid-test

test files for AutoGrid

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avce00

Conversion of ESRI Arcinfo Vector Coverage in E00 format

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avogadro

Molecular Graphics and Modelling System

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avogadro-utils

Molecular Graphics and Modelling System (library)

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axe-demultiplexer

Trie-based DNA sequencing read demultiplexer

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bagel

Computational Chemistry Package

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baitfisher

software package for designing hybrid enrichment probes

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bali-phy

Bayesian Inference of Alignment and Phylogeny

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bamclipper

Remove gene-specific primer sequences from SAM/BAM alignments

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bamkit

tools for common BAM file manipulations

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bamtools

toolkit for manipulating BAM (genome alignment) files

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bandage

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

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bandage-examples

Bioinformatics Application for Navigating De novo Assembly Graphs Easily (data)

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barrnap

rapid ribosomal RNA prediction

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bart

tools for computational magnetic resonance imaging

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bart-view

viewer for multi-dimensional complex-valued data

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bbmap

BBTools genomic aligner and other tools for short sequences

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bbmap-jni

short read aligner and other bioinformatic tools - JNI library

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bcalm

de Bruijn compaction in low memory

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bcftools

genomic variant calling and manipulation of VCF/BCF files

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beagle

Genotype calling, genotype phasing and imputation of ungenotyped markers

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beast2-mcmc

Bayesian MCMC phylogenetic inference

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beast-mcmc

Bayesian MCMC phylogenetic inference

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bedops

high-performance genomic feature operations

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bedtools

suite of utilities for comparing genomic features

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bedtools-test

test data for the bedtools package

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belvu

multiple sequence alignment viewer and phylogenetic tool

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berkeley-express

Streaming quantification for high-throughput sequencing

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bioawk

extension of awk for biological sequence analysis

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biobambam2

tools for early stage alignment file processing

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bio-eagle

Haplotype phasing within a genotyped cohort or using a phased reference panel

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bio-eagle-examples

Examples for bio-eagle

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