Contents of section "Science" in suite "landing"

ctdconverter

Convert CTD files into Galaxy tool and CWL CommandLineTool files

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ctffind

fast and accurate defocus estimation from electron micrographs

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ctsim

Computed tomography simulator

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ctsim-help

Online help file for CTSim

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cutadapt

Clean biological sequences from high-throughput sequencing reads

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cutesv

comprehensive discovery of structural variations of genomic sequences

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cwlformat

code formatter for Common Workflow Language

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cwltest

Common Workflow Language testing framework

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cwltool

Common Workflow Language reference implementation

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cwltool-doc

Common Workflow Language reference implementation -- docs

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cwl-upgrader

Common Workflow Language standalone document upgrader

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daligner

local alignment discovery between long nucleotide sequencing reads

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damapper

long read to reference genome mapping tool

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darknet

Open Source Neural Networks in C

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dascrubber

alignment-based scrubbing pipeline for DNA sequencing reads

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datalad

data files management and distribution platform

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datalad-container

DataLad extension for working with containerized environments

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dawg

simulate the evolution of recombinant DNA sequences

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dazzdb

manage nucleotide sequencing read data

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dcl-f77

GFD-DENNOU Club Library (DCL) - FORTRAN77 version

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dcm2niix

next generation DICOM to NIfTI converter

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dcmtk

OFFIS DICOM toolkit command line utilities

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dcmtk-data

OFFIS DICOM toolkit data files

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debian-astro-logo

Debian Astronomy Pure Blends Logo

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deblur

deconvolution for Illumina amplicon sequencing

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delly

Structural variant discovery by read analysis

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density-fitness

Calculates per-residue electron density scores

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dextractor

(d)extractor and compression command library

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dh-r

Debian helper tools for packaging R libraries

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dialign

Segment-based multiple sequence alignment

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dialign-tx

Segment-based multiple sequence alignment

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dialign-tx-data

Segment-based multiple sequence alignment (data files)

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diamond-aligner

accelerated BLAST compatible local sequence aligner

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dimbl

Distributed Memory Based Learner

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discosnp

discovering Single Nucleotide Polymorphism from raw set(s) of reads

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disulfinder

cysteines disulfide bonding state and connectivity predictor

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disulfinder-data

data files for predictor of disulfide bonds in proteins

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dlmodelbox

Swiss Army Knife of Deep Learning Models

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dmrgpp

Density matrix renormalization group algorithm

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dnaclust

tool for clustering millions of short DNA sequences

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dnapi

adapter prediction for small RNA sequencing - utils

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dnarrange

Method to find rearrangements in long DNA reads relative to a genome seq

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dotter

detailed comparison of two genomic sequences

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dozzaqueux

simulator for chemical mixtures

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dozzaqueux-data

databases for chemical mixtures

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dpuser

Interactive language for handling numbers, strings, and matrices

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drat-trim

DART-trim satisfiability proof checker (binary utils)

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drat-trim-examples

DART-trim satisfiability proof checker (example files)

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drawxtl

crystal structure viewer

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drop-seq-testdata

analyzing Drop-seq data (testdata)

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