- python3 (<< 3.8)
- python3 (>= 3.7~)
- python3-numpy
- python3:any
- libbz2-1.0
- libc6 (>= 2.17)
- libcurl3-gnutls (>= 7.16.2)
- libhts2 (>= 1.2.1)
- liblzma5 (>= 5.1.1alpha+20110809)
- libssl1.1 (>= 1.1.0)
- zlib1g (>= 1:1.1.4)
This modules allows fast parsing of VCF and BCF including region-queries
with Python. This is essential for efficient analyses of nucleotide
variation with Python on high-throughput sequencing data.
.
cyvcf2 is a cython wrapper around htslib. Attributes like
variant.gt_ref_depths return a numpy array directly so they are
immediately ready for downstream use.
.
This package installs the library for Python 3.
Installed Size: 4.6 MB
Architectures: amd64 arm64