- python3-numpy (>= 1:1.16.0~rc1)
- python3-numpy-abi9
- python3 (<< 3.10)
- python3 (>= 3.9~)
- python3-click
- python3-coloredlogs
- python3:any
- libc6 (>= 2.17)
- libhts3 (>= 1.10)
This modules allows fast parsing of VCF and BCF including region-queries
with Python. This is essential for efficient analyses of nucleotide
variation with Python on high-throughput sequencing data.
.
cyvcf2 is a cython wrapper around htslib. Attributes like
variant.gt_ref_depths return a numpy array directly so they are
immediately ready for downstream use.
.
This package installs the library for Python 3.
Installed Size: 4.8 MB
Architectures: arm64 amd64