- r-base-core (>= 3.5.2-1)
- r-api-3.5
- r-api-bioc-3.8
- r-bioc-rsamtools
- r-bioc-zlibbioc
- r-bioc-s4vectors
- r-bioc-iranges
- libc6 (>= 2.23)
- libgcc1 (>= 1:4.2)
- libgomp1 (>= 4.9)
- libstdc++6 (>= 5.2)
- zlib1g (>= 1:1.2.3.3)
The BitSeq package is targeted for transcript expression
analysis and differential expression analysis of RNA-seq data
in two stage process. In the first stage it uses Bayesian
inference methodology to infer expression of individual
transcripts from individual RNA-seq experiments. The second
stage of BitSeq embraces the differential expression analysis
of transcript expression. Providing expression estimates from
replicates of multiple conditions, Log-Normal model of the
estimates is used for inferring the condition mean transcript
expression and ranking the transcripts based on the likelihood
of differential expression.
Installed Size: 5.7 MB
Architectures: amd64 arm64