- r-base-core (>= 4.0.3-1)
- r-api-4.0
- r-api-bioc-3.12
- r-bioc-rsamtools (>= 1.99.3)
- r-bioc-s4vectors
- r-bioc-iranges
- r-bioc-rhtslib (>= 1.15.5)
- libc6 (>= 2.29)
- libcurl4 (>= 7.18.0)
- libgcc-s1 (>= 3.0)
- libgomp1 (>= 6)
- libstdc++6 (>= 5.2)
The BitSeq package is targeted for transcript expression
analysis and differential expression analysis of RNA-seq data
in two stage process. In the first stage it uses Bayesian
inference methodology to infer expression of individual
transcripts from individual RNA-seq experiments. The second
stage of BitSeq embraces the differential expression analysis
of transcript expression. Providing expression estimates from
replicates of multiple conditions, Log-Normal model of the
estimates is used for inferring the condition mean transcript
expression and ranking the transcripts based on the likelihood
of differential expression.
Installed Size: 6.1 MB
Architectures: amd64 arm64