ggd-utils - 0.0.7+ds-3+b6 main

Takes a genome file and (currently) a .vcf.gz or
a .bed.gz and checks that:
.
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
.
As a result, any new genome going into GGD will have
a .genome file that will dictate the sort order
and presence or absence of the 'chr' prefix for chromosomes

Priority: optional
Section: science
Suites: byzantium crimson dawn landing 
Maintainer: Debian Med Packaging Team <debian-med-packaging [꩜] lists.alioth.debian.org>
 
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Dependencies

Installed Size: 5.0 MB
Architectures: amd64  arm64 

 

Versions

0.0.7+ds-3+b6 arm64 0.0.7+ds-3+b6 amd64 0.0.7+ds-3+b2 arm64 0.0.7+ds-3+b2 amd64