ggd-utils - 1.0.0+ds-1+b16 main

Takes a genome file and (currently) a .vcf.gz or
a .bed.gz and checks that:
.
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
.
As a result, any new genome going into GGD will have
a .genome file that will dictate the sort order
and presence or absence of the 'chr' prefix for chromosomes

Priority: optional
Section: science
Suites: byzantium crimson dawn landing 
Maintainer: Debian Med Packaging Team <debian-med-packaging [꩜] lists.alioth.debian.org>
 
Homepage Source Package
 

Dependencies

Installed Size: 6.3 MB
Architectures: arm64  amd64 

 

Versions

1.0.0+ds-1+b16 arm64 1.0.0+ds-1+b16 amd64 1.0.0+ds-1+b15 arm64 1.0.0+ds-1+b15 amd64 1.0.0+ds-1+b14 arm64 1.0.0+ds-1+b14 amd64 1.0.0+ds-1+b13 arm64 1.0.0+ds-1+b13 amd64 1.0.0+ds-1+b12 amd64 1.0.0+ds-1+b12 arm64 1.0.0+ds-1+b11 arm64 1.0.0+ds-1+b11 amd64 1.0.0+ds-1+b9 arm64 1.0.0+ds-1+b9 amd64 1.0.0+ds-1+b6 amd64 1.0.0+ds-1+b6 arm64