- libc6 (>= 2.38)
- libgcc-s1 (>= 3.0)
- libgomp1 (>= 6)
- libhts3t64 (>= 1.17)
- libstdc++6 (>= 14)
- zlib1g (>= 1:1.2.6)
- samtools
- libdbi-perl
- bsdextrautils
- python3
Stacks is a software pipeline for building loci from short-read sequences,
such as those generated on the Illumina platform. Stacks was developed to work
with restriction enzyme-based data, such as RAD-seq, for the purpose of
building genetic maps and conducting population genomics and phylogeography.
.
Note that this package installs Stacks such that all commands must be run as:
$ stacks
Installed Size: 6.0 MB
Architectures: arm64 amd64