Contents of section "Science" in suite "amber"

cwltool

Common Workflow Language reference implementation

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daligner

local alignment discovery between long nucleotide sequencing reads

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dans-gdal-scripts

GDAL contributed tools by Geographic Information Network of Alaska

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darknet

Open Source Neural Networks in C

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dascrubber

alignment-based scrubbing pipeline for DNA sequencing reads

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datalad

data files management and distribution platform

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datalad-container

DataLad extension for working with containerized environments

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dawg

simulate the evolution of recombinant DNA sequences

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dazzdb

manage nucleotide sequencing read data

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dcl-f77

GFD-DENNOU Club Library (DCL) - FORTRAN77 version

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dcm2niix

next generation DICOM to NIfTI converter

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dcmtk

OFFIS DICOM toolkit command line utilities

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debian-astro-logo

Debian Astronomy Pure Blends Logo

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deepnano

alternative basecaller for MinION reads of genomic sequences

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deepnano-data

alternative basecaller for MinION reads of genomic sequences (data)

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delly

Structural variant discovery by read analysis

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dh-r

Debian helper tools for packaging R libraries

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dialign

Segment-based multiple sequence alignment

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dialign-tx

Segment-based multiple sequence alignment

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dialign-tx-data

Segment-based multiple sequence alignment (data files)

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diamond-aligner

accelerated BLAST compatible local sequence aligner

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dicomnifti

converts DICOM files into the NIfTI format

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dicompyler

radiation therapy research platform

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dimbl

Distributed Memory Based Learner

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dindel

determines indel calls from short-read data

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discosnp

discovering Single Nucleotide Polymorphism from raw set(s) of reads

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disulfinder

cysteines disulfide bonding state and connectivity predictor

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disulfinder-data

data files for predictor of disulfide bonds in proteins

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dlmodelbox

Swiss Army Knife of Deep Learning Models

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dnaclust

tool for clustering millions of short DNA sequences

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dotter

detailed comparison of two genomic sequences

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dozzaqueux

simulator for chemical mixtures

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dozzaqueux-data

databases for chemical mixtures

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dpuser

Interactive language for handling numbers, strings, and matrices

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drawxtl

crystal structure viewer

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drslib

Command-line tools for the Data Reference Syntax library

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dsdp

Software for Semidefinite Programming

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dssp

protein secondary structure assignment based on 3D structure

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dwgsim

short sequencing read simulator

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dx

OpenDX (IBM Visualization Data Explorer) - main package

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dxf2gcode

prepares drawings of parts for automatic machine tools

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dxsamples

Sample programs for the OpenDX Data Explorer

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e00compr

Program to read/write Arcinfo compressed E00 files

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easychem

Draw high-quality molecules and 2D chemical formulas

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ea-utils

command-line tools for processing biological sequencing data

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ecaccess

clients to access ECMWF facilities

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ecflow-client

Client tools for Meteorological workflow

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ecflow-server

Meteorological workflow controller - server

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ecopcr

estimate PCR barcode primers quality

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edfbrowser

viewer for biosignal storage files such as bdf and edf

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