Contents of section "Science" in suite "amber"

edlib-aligner

edlib sequence alignment tool using edit distance

main
edtsurf

triangulated mesh surfaces for protein structures

main
eigensoft

reduction of population bias for genetic analyses

main
elastix

toolbox for rigid and nonrigid registration of images

main
elki

Data mining algorithm development framework

main
elki-dev

Data mining algorithm development framework - development files

main
elk-lapw

All-Electron Density-Functional Electronic Structure Code

main
elph

DNA/protein sequence motif finder

main
embassy-domainatrix

Extra EMBOSS commands to handle domain classification file

main
embassy-domalign

Extra EMBOSS commands for protein domain alignment

main
embassy-domsearch

Extra EMBOSS commands to search for protein domains

main
emboss

European molecular biology open software suite

main
emboss-data

data files for the EMBOSS package

main
emboss-explorer

web-based GUI to EMBOSS

main
emboss-lib

EMBOSS Libraries

main
e-mem

Efficient computation of Maximal Exact Matches for very large genomes

main
engauge-digitizer

interactively extracts numbers from bitmap graphs or maps

main
ent

pseudorandom number sequence test program

main
epsilon-bin

Library for wavelet image compression - tools

main
ergo

Quantum chemistry program for large-scale calculations

main
eso-midas

European Southern Observatory Munich Image Data Analysis System

main
eso-midas-testdata

Test data files for ESO-MIDAS

main
eso-pipelines

ESO VLT Instrument pipeline collection

main
esorex

Execution Tool for European Southern Observatory pipelines

main
estscan

ORF-independent detector of coding DNA sequences

main
esys-particle

Software for particle-based numerical modelling. MPI version.

main
etsf-io

Binary tools to check, merge and read ETSF files

main
examl

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

main
exonerate

generic tool for pairwise sequence comparison

main
expeyes

hardware & software framework for developing science experiments

main
expeyes-clib

hardware & software framework for developing science experiments

main
eye

semantic web reasoning engine

main
eyes17

hardware & software framework for developing science experiments

main
falcon

diploid-aware genome assembly of single-molecule sequencing reads

main
fast5

utilities for manipulating Oxford Nanopore Fast5 files

main
fastahack

utility for indexing and sequence extraction from FASTA files

main
fastaq

FASTA and FASTQ file manipulation tools

main
fastdnaml

Tool for construction of phylogenetic trees of DNA sequences

main
fastlink

faster version of pedigree programs of Linkage

main
fastml

maximum likelihood ancestral amino-acid sequence reconstruction

main
fastp

Ultra-fast all-in-one FASTQ preprocessor

main
fastqc

quality control for high throughput sequence data

main
fastqtl

Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

main
fasttree

phylogenetic trees from alignments of nucleotide or protein sequences

main
fastx-toolkit

FASTQ/A short nucleotide reads pre-processing tools

main
fcc

Script to compile C/C++ programs and link to Fortran libraries

main
feedgnuplot

Pipe-oriented frontend to Gnuplot

main
ffindex

simple index/database for huge amounts of small files

main
figtree

graphical phylogenetic tree viewer

main
fitgcp

fitting genome coverage distributions with mixture models

main