Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

R package: DNA copy number data analysis

BioConductor utilities for handling single-cell droplet data

BioConductor assessment of duplication rates in RNA-Seq datasets

R package for RNA-Seq Differential Expression Analysis

GNU R exploratory data analysis and normalization for RNA-Seq

Empirical analysis of digital gene expression data in R

GNU R utilities to create and use an Ensembl based annotation database

BioConductor client to access ExperimentHub resources

GNU R mismatch tolerant maximum common substructure searching

methods for filtering genes from microarray experiments

GNU R lengths of mRNA transcripts for a number of genomes

R package of functions for plotting genomic data

BioConductor utilities for manipulating chromosome identifiers

BioConductor species and taxonomy ID look up tables

BioConductor representation and manipulation of short genomic alignments

GNU R tools for making and manipulating transcript centric annotations

Distributed computing by file or by range

BioConductor representation and manipulation of genomic intervals

Get data from NCBI Gene Expression Omnibus (GEO)

GNU R fit a Gamma-Poisson generalized linear model

annotation maps describing the entire Gene Ontology

GO-terms semantic similarity measures

GNU R gene ontology analyser for RNA-seq and other length biased data

handle graph data structures for BioConductor

GRO-seq Analysis Pipeline

Plotting data and annotation information along genomic coordinates

HDF5 backend for DelayedArray objects

Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts

GNU R filter replicated high-throughput transcriptome sequencing data

BioConductor hypergraph data structures

GNU R independent hypothesis weighting

Imputation for microarray data

base package for enabling powerful shiny web displays of Bioconductor objects

GNU R low-level containers for storing sets of integer ranges

GNU R client-side REST access to KEGG

linear models for microarray data

Symphony integer linear programming solver in GNU R

BioConductor CDF Environment Maker

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

Integrative network analysis of omics data

GNU R statistical analysis for sparse high-throughput sequencing

Multi-Omics Factor Analysis (MOFA)

clustering, differential expression, and trajectory analysis for RNA-Seq

Software for integrating multi-omics experiments in BioConductor

Bioconductor resampling-based multiple hypothesis testing

GNU R comprehensive genome-wide analysis of mutational processes

processing and QA for NanoString mRNA expression data

genome-wide annotation for Human

BioConductor collection of PCA methods