GNU R handling and analysis of high-throughput microbiome census data

BioConductor collection of pre-processing functions

S4 generic functions for Bioconductor proteomics infrastructure

copy number calling and SNV classification using targeted short read sequencing

PWM enrichment analysis

qusage: Quantitative Set Analysis for Gene Expression

GNU R package for Q-value estimation for FDR control

R interface to the graph algorithms contained in the BOOST library

GNU R gene set enrichment / projection displays

BioConductor HDF5 interface to R

GNU R HDF5 compression filters

GNU R hdf5 library

HTSlib high-throughput sequencing library as GNU R package

GNU R Teproducibility-Optimized Test Statistic

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

Subread Sequence Alignment and Counting for R

GNU R interface to genome browsers and their annotation tracks

GNU R client library for the WikiPathways API

BioConductor S4 implementation of vectors and lists

GNU R parse and analyze Illumina SAV files

Single-Cell Analysis Toolkit for Gene Expression Data in R

BioConductor methods for single-cell RNA-Seq data analysis

Collection of Public Single-Cell RNA-Seq Datasets

BioConductor single-cell RNA-Seq analysis utilities

GNU R sequence logos for DNA sequence alignments

GNU R classes and methods for high-throughput short-read sequencing data

S4 Classes for Single Cell Data

BioConductor reference-based single-cell RNA-Seq annotation

BioConductor SnpMatrix and XSnpMatrix classes and methods

BioConductor summary statistics for rows and columns of sparse matrices

BioConductor assay container

GNU R Surrogate Variable Analysis

GNU R/Bioconductor package for integrative analysis with GDC data

Data for the TCGAbiolinksGUI package

GNU R Transcription Factor Binding Site (TFBS) Analysis

Subclonal copy number and LOH prediction from whole genome sequencing

transcript-level estimates for biological sequencing

BioConductor annotation of genetic variants

GNU R wrench normalization for sparse count data

BioConductor representation and manpulation of external sequences

(Virtual) zlibbioc Bioconductor package

GNU R abind multi-dimensional array combination function

GNU R package for regression transformations

GNU R actuarial functions and heavy tailed distributions

GNU R analysis of ecological data

GNU R exploratory analysis of genetic and genomic data

GNU R lattice-based package for the representation of multivariate data

GNU R exploratory analyses for the phylogenetic comparative method

Applied Econometrics with R

GNU R package for analyzing factorial experiments using ANOVA or mixed models