machine learning tools for classification algorithms
Helsinki Finite-State Transducer Technology
Spell checker library and tool based on HFST
sensitive protein sequence searching based on HMM-HMM alignment
sensitive protein sequence searching based on HMM-HMM alignment (data)
realtime alignment of Illumina reads
long read genome assembler based on hinging
graph-based alignment of short nucleotide reads to many genomes
profile hidden Markov models for protein sequence analysis
prints the date in Latin
tools biological sequences: bam-filter, count-reads, vcf-check
Hypothesis testing using Phylogenies (common files)
Hypothesis testing using Phylogenies (MPI version)
Hypothesis testing using Phylogenies (pthreads version)
iterative De Bruijn Graph short read assemblers
iterative De Bruijn Graph short read assemblers (extra tools)
Benchmark generator for the IDseq Portal
analyzes antibody repertoires to find new V genes
infers V(D)J recombination processes from sequencing data
Implicit Interval Tree with Interpolation Index
Image processing program with a focus on microscopy images
Image viewing and analysis application
powerful and flexible simulator of biological evolution
Organic Chemistry Toolkit Utilities
inference of RNA secondary structural alignments
kinematical backreaction and average scale factor evolution
Inkscape plugin to help draw surveys
Inkscape plugin to digitise printed surveys
sequencing simulator producing realistic Illumina reads
integrating PSMs into genome browser visualisations
efficient phylogenetic software by maximum likelihood
Image Reduction and Analysis Facility
Image Reduction and Analysis Facility (development files)
FITS utilities for IRAF
CCD mosaic reduction package for IRAF
IRAF NOAO data reduction package
IRAF NOAO data reduction package (development files)
IRAF package to obtain radial velocities from spectra
IRAF package for Tabular Spectra
Handle the WCS of a FITS image (IRAF package)
IRST Language Modeling Toolkit
schema for ISMRMRD
command-line tools for ISMRMRD
semi-automatic segmentation of structures in 3D images
iterative virus sequence assembler
functions broadly useful for viral amplicon-based sequencing
Smith-Waterman algorithm with Gotoh's improvement
multiple alignment editor
fast linear algebra library for Java