Contents of section "Science" in suite "byzantium"

jellyfish

count k-mers in DNA sequences

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jellyfish1

count k-mers in DNA sequences

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jellyfish-examples

count k-mers in DNA sequences (examples for testing)

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jemboss

graphical user interface to EMBOSS

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jmodeltest

HPC selection of models of nucleotide substitution

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jmol

Molecular Viewer

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jnifti-demos

sample files and demo scripts for JNIfTI toolbox

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jsamp

Java Simple Application Messaging Protocol tool for VO

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jube

JUBE Benchmarking Environment

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julia

high-performance programming language for technical computing

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julia-common

high-performance programming language for technical computing (common files)

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jupyter-notebook

Jupyter interactive notebook

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kalign

Global and progressive multiple sequence alignment

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kallisto

near-optimal RNA-Seq quantification

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kallisto-examples

near-optimal RNA-Seq quantification (example data)

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kalzium

periodic table and chemistry tools

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kalzium-data

data files for Kalzium

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kaptive

obtain information about K and O types for Klebsiella genome assemblies

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kaptive-data

reference data for kaptive for Klebsiella genome assemblies

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kaptive-example

example data for kaptive for Klebsiella genome assemblies

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khmer

in-memory DNA sequence kmer counting, filtering & graph traversal

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khmer-common

common files for the khmer project tools

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kineticstools

detection of DNA modifications

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kineticstools-data

detection of DNA modifications -- data files

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king-probe

Evaluate and visualize protein interatomic packing

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kissplice

Detection of various kinds of polymorphisms in RNA-seq data

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kleborate

tool to screen Klebsiella genome assemblies

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kleborate-examples

tool to screen Klebsiella genome assemblies (example data)

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klustakwik

automatic sorting of the samples (spikes) into clusters

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kma

mapping genomic sequences to raw reads directly against redundant databases

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kmc

count kmers in genomic sequences

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kmer

suite of tools for DNA sequence analysis

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kmer-examples

sample data for kmer suite of tools for DNA sequence analysis

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kmerresistance

correlates mapped genes with the predicted species of WGS samples

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konclude

tableau-based description logic reasoner for the semantic web

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kraken

assigning taxonomic labels to short DNA sequences

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kraken2

taxonomic classification system using exact k-mer matches

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kst

scientific data plotting tool

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kstars

desktop planetarium, observation planning and telescope control

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kstars-data

data files for KStars desktop planetarium

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lagan

highly parametrizable pairwise global genome sequence aligner

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lamarc

Likelihood Analysis with Metropolis Algorithm using Random Coalescence

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lambda-align

Local Aligner for Massive Biological DatA

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lambda-align2

Local Aligner for Massive Biological DatA - v2

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lammps

Molecular Dynamics Simulator

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last-align

genome-scale comparison of biological sequences

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lastz

pairwise aligning DNA sequences

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lastz-examples

pairwise aligning DNA sequences (examples and test scripts)

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lbt

converts from LTL formulas to Büchi automata

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leaff

biological sequence library utilities and applications

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