Quality Assessment Tools for Oxford Nanopore MinION data

GNU R low-level containers for storing sets of integer ranges

Identify, Annotate and Visualize Alternative Splicing and

GNU R client-side REST access to KEGG

linear models for microarray data

Symphony integer linear programming solver in GNU R

BioConductor CDF Environment Maker

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

BioCOnductor BigWig and BAM related utilities

Integrative network analysis of omics data

GNU R statistical analysis for sparse high-throughput sequencing

GNU R meta-analyses on P-Values of differential analyses

Multi-Omics Factor Analysis (MOFA)

clustering, differential expression, and trajectory analysis for RNA-Seq

Software for integrating multi-omics experiments in BioConductor

Bioconductor resampling-based multiple hypothesis testing

GNU R comprehensive genome-wide analysis of mutational processes

processing and QA for NanoString mRNA expression data

Network Seriation And Modularization

Exploratory analysis and differential expression for RNA-seq data

Preprocessing tools for oligonucleotide arrays

Classes for high-throughput arrays supported by oligo and crlmm

smooth interfacing of different database packages

genome-wide annotation for Human

BioConductor collection of PCA methods

GNU R handling and analysis of high-throughput microbiome census data

BioConductor collection of pre-processing functions

activity inference from gene expression

S4 generic functions for Bioconductor proteomics infrastructure

copy number calling and SNV classification using targeted short read sequencing

PWM enrichment analysis

Comprehensive QTL annotation of GWAS results

qusage: Quantitative Set Analysis for Gene Expression

GNU R package for Q-value estimation for FDR control

R interface to the graph algorithms contained in the BOOST library

molecular informatics toolkit for compound-protein interaction

Creating a DelayedMatrix of Regression Residuals

GNU R gene set enrichment / projection displays

BioConductor HDF5 interface to R

GNU R HDF5 compression filters

GNU R hdf5 library

HTSlib high-throughput sequencing library as GNU R package

GNU R Teproducibility-Optimized Test Statistic

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

Subread Sequence Alignment and Counting for R

GNU R interface to genome browsers and their annotation tracks

GNU R client library for the WikiPathways API

BioConductor S4 implementation of vectors and lists

GNU R parse and analyze Illumina SAV files

creating a DelayedMatrix of scaled and centered values using GNU R