Contents of section "GNU R" in suite "crimson"

r-bioc-scater

Single-Cell Analysis Toolkit for Gene Expression Data in R

main
r-bioc-scran

BioConductor methods for single-cell RNA-Seq data analysis

main
r-bioc-scrnaseq

Collection of Public Single-Cell RNA-Seq Datasets

main
r-bioc-scuttle

BioConductor single-cell RNA-Seq analysis utilities

main
r-bioc-seqlogo

GNU R sequence logos for DNA sequence alignments

main
r-bioc-shortread

GNU R classes and methods for high-throughput short-read sequencing data

main
r-bioc-singlecellexperiment

S4 Classes for Single Cell Data

main
r-bioc-singler

BioConductor reference-based single-cell RNA-Seq annotation

main
r-bioc-snpstats

BioConductor SnpMatrix and XSnpMatrix classes and methods

main
r-bioc-sparsematrixstats

BioConductor summary statistics for rows and columns of sparse matrices

main
r-bioc-stringdb

Search Tool for the Retrieval of Interacting proteins database

main
r-bioc-structuralvariantannotation

Variant annotations for structural variants

main
r-bioc-summarizedexperiment

BioConductor assay container

main
r-bioc-sva

GNU R Surrogate Variable Analysis

main
r-bioc-tcgabiolinks

GNU R/Bioconductor package for integrative analysis with GDC data

main
r-bioc-tcgabiolinksgui.data

Data for the TCGAbiolinksGUI package

main
r-bioc-tfbstools

GNU R Transcription Factor Binding Site (TFBS) Analysis

main
r-bioc-titancna

Subclonal copy number and LOH prediction from whole genome sequencing

main
r-bioc-tximeta

Transcript Quantification Import with Automatic Metadata

main
r-bioc-tximport

transcript-level estimates for biological sequencing

main
r-bioc-tximportdata

GNU R various transcript abundance quantifiers

main
r-bioc-variantannotation

BioConductor annotation of genetic variants

main
r-bioc-wrench

GNU R wrench normalization for sparse count data

main
r-bioc-xvector

BioConductor representation and manpulation of external sequences

main
r-bioc-zlibbioc

(Virtual) zlibbioc Bioconductor package

main
r-cran-abind

GNU R abind multi-dimensional array combination function

main
r-cran-acepack

GNU R package for regression transformations

main
r-cran-actuar

GNU R actuarial functions and heavy tailed distributions

main
r-cran-ade4

GNU R analysis of ecological data

main
r-cran-adegenet

GNU R exploratory analysis of genetic and genomic data

main
r-cran-adegraphics

GNU R lattice-based package for the representation of multivariate data

main
r-cran-adephylo

GNU R exploratory analyses for the phylogenetic comparative method

main
r-cran-admisc

Adrian Dusa's Miscellaneous GNU R functions

main
r-cran-aer

Applied Econometrics with R

main
r-cran-afex

GNU R package for analyzing factorial experiments using ANOVA or mixed models

main
r-cran-airr

GNU R AIRR data representation reference library

main
r-cran-amap

Another Multidimensional Analysis Package

main
r-cran-amelia

GNU R package supporting multiple imputation of missing data

main
r-cran-amore

GNU R: A MORE flexible neural network package

main
r-cran-animation

GNU R gallery of animations and utilities to create animations

main
r-cran-apcluster

Affinity Propagation Clustering

main
r-cran-ape

GNU R package for Analyses of Phylogenetics and Evolution

main
r-cran-aplpack

Another Plot PACKage: stem.leaf, bagplot, faces, spin3R and others

main
r-cran-argparse

GNU R command line parser for optional and positional arguments

main
r-cran-argparser

GNU R command-line argument parser

main
r-cran-arm

Data Analysis Using Regression and Multilevel/Hierarchical Models

main
r-cran-arsenal

arsenal of GNU R functions for large-scale statistical summaries

main
r-cran-askpass

safe password entry for GNU R, Git, and SSH

main
r-cran-assertive.base

GNU R lightweight core of the 'assertive' package

main
r-cran-assertive.sets

GNU R assertions to check properties of sets

main