Contents of section "Science" in suite "crimson"

chromimpute

Large-scale systematic epigenome imputation

main
cif2hkl

Convert crystallographic descriptions into HKL F^2 reflection lists

main
cif-linguist

transform CIF data among CIF formats and dialects

main
cif-tools

Suite of tools to manipulate, validate and query mmCIF files

main
circlator

circularize genome assemblies

main
circos

plotter for visualizing data

main
circos-tools

plotter for visualizing data - helper utilities

main
ckon

automatic build tool for ROOT data analysis software

main
clearcut

extremely efficient phylogenetic tree reconstruction

main
clonalframe

inference of bacterial microevolution using multilocus sequence data

main
clonalframeml

Efficient Inference of Recombination in Whole Bacterial Genomes

main
clonalorigin

inference of homologous recombination in bacteria using whole genome sequences

main
clustalo

General-purpose multiple sequence alignment program for proteins

main
clustalw

global multiple nucleotide or peptide sequence alignment

main
clustalx

Multiple alignment of nucleic acid and protein sequences (graphical interface)

main
cmor-tables

MIP tables for the Climate Model Output Rewriter library

main
cmtk

Computational Morphometry Toolkit

main
cnvkit

Copy number variant detection from targeted DNA sequencing

main
code-saturne

General purpose Computational Fluid Dynamics (CFD) software

main
code-saturne-bin

General purpose Computational Fluid Dynamics (CFD) software - binaries

main
code-saturne-data

General purpose Computational Fluid Dynamics (CFD) software - data

main
code-saturne-doc

General purpose Computational Fluid Dynamics (CFD) software - Documentation

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code-saturne-include

General purpose Computational Fluid Dynamics (CFD) software - includes

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codonw

Correspondence Analysis of Codon Usage

main
cod-tools

tools for manipulating CIF format files

main
coinor-cbc

Coin-or branch-and-cut mixed integer programming solver

main
coinor-clp

Coin-or linear programming solver

main
coinor-csdp

Software package for semidefinite programming (binaries)

main
coinor-libbonmin4

COIN-OR mixed integer programming

main
coinor-libcbc3

Coin-or branch-and-cut mixed integer programming solver (shared libraries)

main
coinor-libcgl1

COIN-OR Cut Generation Library

main
coinor-libclp1

Coin-or linear programming solver (shared libraries)

main
coinor-libcoinutils3v5

Coin-or collection of utility classes (binaries and libraries)

main
coinor-libosi1v5

COIN-OR Open Solver Interface

main
coinor-libsymphony3

COIN-OR solver for mixed-integer linear programs (shared libraries)

main
coinor-libvol1

Coin-or linear programming solver (libraries)

main
coinor-symphony

COIN-OR solver for mixed-integer linear programs

main
colmap

Structure-from-Motion and Multi-View Stereo

main
comet-ms

Tandem mass spectrometry (MS/MS) search engine

main
concavity

predictor of protein ligand binding sites from structure and conservation

main
conda-package-handling

create and extract conda packages of various formats

main
connectome-workbench

brain visualization, analysis and discovery tool

main
conservation-code

protein sequence conservation scoring tool

main
covtobed

convert the coverage track from a BAM file into a BED file

main
covtobed-examples

example data and scripts for mindthegap

main
cp2k

Ab Initio Molecular Dynamics

main
cp2k-data

Ab Initio Molecular Dynamics (data files)

main
cpl-plugin-amber

ESO data reduction pipeline for the AMBER instrument

main
cpl-plugin-giraf

ESO data reduction pipeline for the GIRAFFE instrument

main
cpl-plugin-hawki

ESO data reduction pipeline for the HAWK-I instrument

main