Contents of section "Science" in suite "crimson"

cpl-plugin-muse

ESO data reduction pipeline for the MUSE instrument

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cpl-plugin-naco

ESO data reduction pipeline for the NaCo instrument

main
cpl-plugin-uves

ESO data reduction pipeline for the UVES instrument

main
cpl-plugin-vimos

ESO data reduction pipeline for the VIMOS instrument

main
cpl-plugin-visir

ESO data reduction pipeline for the VISIR instrument

main
cpuinfo

CPU INFOrmation library (binary utilities)

main
crac

integrated RNA-Seq read analysis

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critterding

Evolving Artificial Life

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ctdconverter

Convert CTD files into Galaxy tool and CWL CommandLineTool files

main
ctsim

Computed tomography simulator

main
ctsim-help

Online help file for CTSim

main
cutadapt

Clean biological sequences from high-throughput sequencing reads

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cutesv

comprehensive discovery of structural variations of genomic sequences

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cwlformat

code formatter for Common Workflow Language

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cwltool

Common Workflow Language reference implementation

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cwl-upgrader

Common Workflow Language standalone document upgrader

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daligner

local alignment discovery between long nucleotide sequencing reads

main
damapper

long read to reference genome mapping tool

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darknet

Open Source Neural Networks in C

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dascrubber

alignment-based scrubbing pipeline for DNA sequencing reads

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datalad

data files management and distribution platform

main
datalad-container

DataLad extension for working with containerized environments

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dawg

simulate the evolution of recombinant DNA sequences

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dazzdb

manage nucleotide sequencing read data

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dcl-f77

GFD-DENNOU Club Library (DCL) - FORTRAN77 version

main
dcm2niix

next generation DICOM to NIfTI converter

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dcmtk

OFFIS DICOM toolkit command line utilities

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debian-astro-logo

Debian Astronomy Pure Blends Logo

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delly

Structural variant discovery by read analysis

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density-fitness

Calculates per-residue electron density scores

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dextractor

(d)extractor and compression command library

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dh-r

Debian helper tools for packaging R libraries

main
dialign

Segment-based multiple sequence alignment

main
dialign-tx

Segment-based multiple sequence alignment

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dialign-tx-data

Segment-based multiple sequence alignment (data files)

main
dials

Diffraction Integration for Advanced Light Sources

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diamond-aligner

accelerated BLAST compatible local sequence aligner

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dicomnifti

converts DICOM files into the NIfTI format

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dimbl

Distributed Memory Based Learner

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discosnp

discovering Single Nucleotide Polymorphism from raw set(s) of reads

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disulfinder

cysteines disulfide bonding state and connectivity predictor

main
disulfinder-data

data files for predictor of disulfide bonds in proteins

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dlmodelbox

Swiss Army Knife of Deep Learning Models

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dnaclust

tool for clustering millions of short DNA sequences

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dnapi

adapter prediction for small RNA sequencing - utils

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dnarrange

Method to find rearrangements in long DNA reads relative to a genome seq

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dotter

detailed comparison of two genomic sequences

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dozzaqueux

simulator for chemical mixtures

main
dozzaqueux-data

databases for chemical mixtures

main
dpuser

Interactive language for handling numbers, strings, and matrices

main