Tk widgets for astronomical imaging and data visualization

structural alignment of proteins

statistical calculations of essentiality of genes or genomic regions

identification of modified nucleotides from raw nanopore sequencing data

Tool for OPerations on Catalogues And Tables

post-processor for TopHat unmapped reads

set of programs implementing The OpenMS Proteomic Pipeline

Conversion utility from pockettopo to therion, for cave surveying

Top-down proteoform identification and characterization (programs)

Top-down proteoform identification and characterization (common data)

transmembrane topology prediction

Application to calculate ramachandran z-scores

Exact combinatorial optimization for Graphical Models

Exact combinatorial optimization for Graphical Models - documentation

bulk submission of chromatogram data to dbEST

Documentation and sample files for trace2dbest

interpretation of DNA Sanger sequencing data

find coding regions within RNA transcript sequences

Runs formatted documents through transformations/translation

helper for transrate

find rho-independent transcription terminators in bacterial genomes

trajectory analyzer and visualizer

Parallelized reconstruction of phylogenetic trees by maximum likelihood

Reconstruction of phylogenetic trees by maximum likelihood

Java re-implementation of Michael Eisen's TreeView

Displays and prints phylogenetic trees

locate and display tandem repeats in DNA sequences

locate and display tandem repeats in DNA sequences (examples)

automate quality and adapter trimming for DNA sequencing

flexible read trimming tool for Illumina NGS data

toolkit to carry out genetic association for multi-category phenotypes

Cave Survey drawing software

genetic variant caller for Ion Torrent sequencing platforms

tiny web map service

build the compacted de Bruijn graph from many complete genomes

error correction algorithm designed for short-reads from NGS

Unicode Tokenizer

Data files for Ucto

Utilities for the UCX messaging library

integrated bioinformatics toolkit

required data for UGENE - integrated bioinformatics toolkit

universal hardware driver for Ettus Research products - host apps

Utility for Nanopore Current Alignment to Large Expanses of DNA

high-performance phylogenetic diversity calculations (binaries)

Unihedron Device manager (UDM)

Toolkit for nucleic acid k-mer analysis

Parser for expressions concerning physical values

Powerful units converter with a GUI

Visualization Applet for RNA

annotate a VCF with other VCFs/BEDs/tabixed files